Tags

KAUST

• KAUST goes open access 01 Jul 2014
• Academic Work-Life Balance at KAUST 28 Aug 2011
• More KAUST Beacon photos 25 Jun 2011
• Visualizing my inbox load 06 Feb 2011
• Informational resources about KAUST on the web 08 Apr 2009

computing

• Support the stackexchange for computational science 30 Nov 2011
• A better way to do multiple Gmail signatures: canned responses 02 Nov 2011
• Getting things to install for the correct shell in Mac OS X 24 Nov 2009

os-x

• Getting things to install for the correct shell in Mac OS X 24 Nov 2009

python

• Step 7 - Automate the tests 29 May 2015
• Step 6 - Keep track of issues 16 May 2015
• Step 5 - write tests 15 May 2015
• Step 4 - write docstrings 14 May 2015
• Step 2 - Code in the open 12 May 2015
• Step 1 - Use version control 11 May 2015
• 12 steps toward rock-solid scientific Python code 10 May 2015
• Testing whether your code produces the correct plots -- in Python and on Travis 13 Jan 2015
• Reviewing my marathon training using MapMyFitness and Pandas 31 Dec 2014
• How and why I'm teaching my kids to code 09 Dec 2014
• Documentation, testing, and default arguments for your MATLAB packages 12 Oct 2013
• Giving a math talk using IPython notebook slides and Wakari 21 Sep 2013
• Convert SAGE worksheets to IPython notebooks 16 Jan 2013
• NodePy version 0.4 released 28 Aug 2012
• Python code for making a histogram of your e-mail volume 07 Feb 2011
• Visualizing my inbox load 06 Feb 2011
• nodepy 0.3 available via easy_install 13 Jan 2011
• Using pylint to clean up Python code 06 Jan 2011
• Getting things to install for the correct shell in Mac OS X 24 Nov 2009

open-access

• KAUST goes open access 01 Jul 2014
• Adopting the Reproducible Research Standard 06 Dec 2012
• 7 Habits of the Open Scientist #3: Pre-publication dissemination of research 22 Aug 2012
• 7 Habits of the Open Scientist: #1 -- Open publishing 01 Aug 2012
• 7 Habits of the Open Scientist 31 Jul 2012
• Dissecting Elsevier's "letter to the mathematics community" 28 Feb 2012
• New Junk Publisher: MASAUM Network 11 Jan 2012
• Endorse the Science Code Manifesto 07 Jan 2012
• In defense of "Open Submission" in scientific publishing 16 Dec 2011
• Book Review: Reinventing Discovery 10 Nov 2011
• "Open Access" and unscrupulous scientific publishers 08 Sep 2010

scientific-publishing

• 5 reasons why you should submit your next paper to CAMCoS 17 Jan 2013
• Why I signed the Cost of Knowledge 23 Dec 2012
• Adopting the Reproducible Research Standard 06 Dec 2012
• You might be a low-quality scientific journal if... 16 Oct 2012
• Impact of the Elsevier boycott 11 Oct 2012
• 7 Habits of the Open Scientist #3: Pre-publication dissemination of research 22 Aug 2012
• 7 Habits of the Open Scientist: #1 -- Open publishing 01 Aug 2012
• Harvard suggests that its faculty resign from editing overpriced journals 26 Apr 2012
• Should your advisor be an author on your papers? 13 Mar 2012
• Dissecting Elsevier's "letter to the mathematics community" 28 Feb 2012
• The Cost of Knowledge: I've signed 19 Feb 2012
• What is this thing we call the arXiv, really? 20 Jan 2012
• New Junk Publisher: MASAUM Network 11 Jan 2012
• Endorse the Science Code Manifesto 07 Jan 2012
• In defense of "Open Submission" in scientific publishing 16 Dec 2011
• Book Review: Reinventing Discovery 10 Nov 2011
• Collaborative scientific reading 03 Nov 2011
• Managing publication lists in HTML 28 Oct 2011
• Searching the scientific literature 27 Oct 2011
• Springer denies scientist access to her own research 21 Oct 2011
• What journals do you read? 14 Oct 2011
• What is science? 19 May 2011
• "Open Access" and unscrupulous scientific publishers 08 Sep 2010

programming

• How and why I'm teaching my kids to code 09 Dec 2014
• Endorse the Science Code Manifesto 07 Jan 2012
• Support the stackexchange for computational science 30 Nov 2011
• How to edit all files containing a particular string 27 Jun 2011
• Using pylint to clean up Python code 06 Jan 2011

pylint

• Using pylint to clean up Python code 06 Jan 2011

nodepy

• NodePy version 0.4 released 28 Aug 2012
• nodepy 0.3 available via easy_install 13 Jan 2011

easy_install

• nodepy 0.3 available via easy_install 13 Jan 2011

software-distribution

• Clawpack turns 20 01 Dec 2014
• NodePy version 0.4 released 28 Aug 2012
• 7 Habits of the Open Scientist: #2 -- Reproducible Research 03 Aug 2012
• 7 Habits of the Open Scientist 31 Jul 2012
• Endorse the Science Code Manifesto 07 Jan 2012
• nodepy 0.3 available via easy_install 13 Jan 2011

publications

• Adopting the Reproducible Research Standard 06 Dec 2012
• 7 Habits of the Open Scientist #3: Pre-publication dissemination of research 22 Aug 2012
• 7 Habits of the Open Scientist 31 Jul 2012
• What is this thing we call the arXiv, really? 20 Jan 2012
• Endorse the Science Code Manifesto 07 Jan 2012
• Do you know what your colleagues are reading? 15 Nov 2011
• Managing publication lists in HTML 28 Oct 2011
• What journals do you read? 14 Oct 2011
• I have a book! 25 Jan 2011

SSP

• Internal stability of Runge-Kutta methods 11 Oct 2012
• The positivity pipe dream fulfilled? 31 May 2011
• I have a book! 25 Jan 2011

e-mail

• A better way to do multiple Gmail signatures: canned responses 02 Nov 2011
• Python code for making a histogram of your e-mail volume 07 Feb 2011
• Visualizing my inbox load 06 Feb 2011

science

• 7 Habits of the Open Scientist: #2 -- Reproducible Research 03 Aug 2012
• 7 Habits of the Open Scientist 31 Jul 2012
• Book Review: Reinventing Discovery 10 Nov 2011
• Collaborative scientific reading 03 Nov 2011
• What is science? 19 May 2011

bibliographic-reference-management

• Congratulations, you've reinvented Bibtex. 02 Feb 2012
• Managing publication lists in HTML 28 Oct 2011
• What journals do you read? 14 Oct 2011
• Mendeley's PDF import has improved dramatically 04 Jun 2011
• Why I won't be a Mendeley university advisor (for now) 23 May 2011

mendeley

• How to avoid javascript errors when copy-pasting Bibtex citations in Mendeley on Mac OS X 15 Feb 2013
• Congratulations, you've reinvented Bibtex. 02 Feb 2012
• Do you know what your colleagues are reading? 15 Nov 2011
• Managing publication lists in HTML 28 Oct 2011
• Searching the scientific literature 27 Oct 2011
• What journals do you read? 14 Oct 2011
• Mendeley's PDF import has improved dramatically 04 Jun 2011
• Why I won't be a Mendeley university advisor (for now) 23 May 2011

tools

• My favorite new tool: ack 24 May 2011

UNIX

• My favorite new tool: ack 24 May 2011

heterogeneous-media

• How do shock waves behave in inhomogeneous materials? 29 May 2011

hyperbolic-PDEs

• Clawpack turns 20 01 Dec 2014
• HyperPython 28 May 2014
• A Tale of Two Theorems 14 Oct 2013
• A curious upwind implicit scheme for advection 11 Oct 2012
• The positivity pipe dream fulfilled? 31 May 2011
• How do shock waves behave in inhomogeneous materials? 29 May 2011

shocks

• How do shock waves behave in inhomogeneous materials? 29 May 2011

numerical-analysis

• Notes 2014.03.03 03 Mar 2014
• Notes 2014.02.27 27 Feb 2014
• Notes 2014.02.22 22 Feb 2014
• A Tale of Two Theorems 14 Oct 2013
• Internal stability of Runge-Kutta methods 11 Oct 2012
• A curious upwind implicit scheme for advection 11 Oct 2012
• NodePy version 0.4 released 28 Aug 2012
• Can a region of absolute stability be rectangular? 17 Mar 2012
• Support the stackexchange for computational science 30 Nov 2011
• What journals do you read? 14 Oct 2011
• The positivity pipe dream fulfilled? 31 May 2011

positivity

• The positivity pipe dream fulfilled? 31 May 2011

mathematical-exposition

• Dispersion relations for linear systems of PDEs 28 May 2014
• The Schrodinger equation is not a reaction-diffusion equation 22 Feb 2014
• A Tale of Two Theorems 14 Oct 2013
• The positivity pipe dream fulfilled? 31 May 2011

photos

• More KAUST Beacon photos 25 Jun 2011

linux

• How to edit all files containing a particular string 27 Jun 2011

Idiocy-of-Google

• Do you know what your colleagues are reading? 15 Nov 2011
• The one thing I can't stand about blogger (and Google in general!) 18 Aug 2011

academia

• Book Review: Reinventing Discovery 10 Nov 2011
• Managing publication lists in HTML 28 Oct 2011
• Springer denies scientist access to her own research 21 Oct 2011
• What journals do you read? 14 Oct 2011
• Academic Work-Life Balance at KAUST 28 Aug 2011

life

• Academic Work-Life Balance at KAUST 28 Aug 2011

RSS

• Do you know what your colleagues are reading? 15 Nov 2011
• Searching the scientific literature 27 Oct 2011
• What journals do you read? 14 Oct 2011

scientific-reading

• 7 Habits of the Open Scientist 31 Jul 2012
• Do you know what your colleagues are reading? 15 Nov 2011
• Book Review: Reinventing Discovery 10 Nov 2011
• Collaborative scientific reading 03 Nov 2011
• Searching the scientific literature 27 Oct 2011
• What journals do you read? 14 Oct 2011

research

• 7 Habits of the Open Scientist: #2 -- Reproducible Research 03 Aug 2012
• Book Review: Reinventing Discovery 10 Nov 2011
• Searching the scientific literature 27 Oct 2011

CSS

• Managing publication lists in HTML 28 Oct 2011

HTML

• A better way to do multiple Gmail signatures: canned responses 02 Nov 2011
• Managing publication lists in HTML 28 Oct 2011

productivity

• A better way to do multiple Gmail signatures: canned responses 02 Nov 2011

refereeing

• Why I signed the Cost of Knowledge 23 Dec 2012
• Impact of the Elsevier boycott 11 Oct 2012
• Dissecting Elsevier's "letter to the mathematics community" 28 Feb 2012
• The Cost of Knowledge: I've signed 19 Feb 2012
• What is this thing we call the arXiv, really? 20 Jan 2012
• In defense of "Open Submission" in scientific publishing 16 Dec 2011
• Collaborative scientific reading 03 Nov 2011

scientific-computing

• Clawpack turns 20 01 Dec 2014
• Don't scrap the DOE CSGF program 23 Jun 2013
• 7 Habits of the Open Scientist: #2 -- Reproducible Research 03 Aug 2012
• Endorse the Science Code Manifesto 07 Jan 2012
• Support the stackexchange for computational science 30 Nov 2011

arXiv

• 7 Habits of the Open Scientist #3: Pre-publication dissemination of research 22 Aug 2012
• 7 Habits of the Open Scientist: #1 -- Open publishing 01 Aug 2012
• What is this thing we call the arXiv, really? 20 Jan 2012

academic-spring

• Why I signed the Cost of Knowledge 23 Dec 2012
• Impact of the Elsevier boycott 11 Oct 2012
• Dissecting Elsevier's "letter to the mathematics community" 28 Feb 2012

authorship

• Should your advisor be an author on your papers? 13 Mar 2012

Runge-Kutta-methods

• A Tale of Two Theorems 14 Oct 2013
• Internal stability of Runge-Kutta methods 11 Oct 2012
• NodePy version 0.4 released 28 Aug 2012
• Can a region of absolute stability be rectangular? 17 Mar 2012

open-science

• Step 3 - Add a README and a License 13 May 2015
• Step 2 - Code in the open 12 May 2015
• Open scientific collaboration 22 Dec 2012
• 7 Habits of the Open Scientist #3: Pre-publication dissemination of research 22 Aug 2012
• 7 Habits of the Open Scientist: #2 -- Reproducible Research 03 Aug 2012
• 7 Habits of the Open Scientist: #1 -- Open publishing 01 Aug 2012
• 7 Habits of the Open Scientist 31 Jul 2012

reproducible-research

• Reflections on the 2012 ICERM Reproducibility Workshop 14 Dec 2012
• Adopting the Reproducible Research Standard 06 Dec 2012
• 7 Habits of the Open Scientist: #2 -- Reproducible Research 03 Aug 2012
• 7 Habits of the Open Scientist 31 Jul 2012

CFL-condition

• A Tale of Two Theorems 14 Oct 2013
• A curious upwind implicit scheme for advection 11 Oct 2012

advection

• A Tale of Two Theorems 14 Oct 2013
• A curious upwind implicit scheme for advection 11 Oct 2012

stability

• A Tale of Two Theorems 14 Oct 2013
• Internal stability of Runge-Kutta methods 11 Oct 2012

roundoff

• Internal stability of Runge-Kutta methods 11 Oct 2012

Jekyll

• Switching from Blogger to Jekyll 25 Oct 2012

blogging

• Switching from Blogger to Jekyll 25 Oct 2012

stackexchange

• Open scientific collaboration 22 Dec 2012

ipython

• Teaching with SageMathCloud 31 May 2014
• HyperPython 28 May 2014
• Giving a math talk using IPython notebook slides and Wakari 21 Sep 2013
• Convert SAGE worksheets to IPython notebooks 16 Jan 2013

bibtex

• How to avoid javascript errors when copy-pasting Bibtex citations in Mendeley on Mac OS X 15 Feb 2013

CSGF

• Don't scrap the DOE CSGF program 23 Jun 2013

conferences

• Giving a math talk using IPython notebook slides and Wakari 21 Sep 2013

presentations

• Giving a math talk using IPython notebook slides and Wakari 21 Sep 2013

MATLAB

• Documentation, testing, and default arguments for your MATLAB packages 12 Oct 2013

testing

• Step 7 - Automate the tests 29 May 2015
• Step 5 - write tests 15 May 2015
• 12 steps toward rock-solid scientific Python code 10 May 2015
• Testing whether your code produces the correct plots -- in Python and on Travis 13 Jan 2015
• Documentation, testing, and default arguments for your MATLAB packages 12 Oct 2013

documentation

• Step 6 - Keep track of issues 16 May 2015
• Step 4 - write docstrings 14 May 2015
• 12 steps toward rock-solid scientific Python code 10 May 2015
• Documentation, testing, and default arguments for your MATLAB packages 12 Oct 2013

software

• Documentation, testing, and default arguments for your MATLAB packages 12 Oct 2013

RK-Opt

• Documentation, testing, and default arguments for your MATLAB packages 12 Oct 2013

paper-review

• A Tale of Two Theorems 14 Oct 2013

PDE

• Dispersion relations for linear systems of PDEs 28 May 2014
• A Tale of Two Theorems 14 Oct 2013

time-stepping

• Notes 2014.03.03 03 Mar 2014
• Notes 2014.02.27 27 Feb 2014
• Notes 2014.02.22 22 Feb 2014

aeroacoustics

• Notes 2014.02.27 27 Feb 2014
• Notes 2014.02.22 22 Feb 2014

papers

• Notes 2014.02.27 27 Feb 2014
• Notes 2014.02.22 22 Feb 2014

flux-reconstruction

• Notes 2014.02.27 27 Feb 2014
• Notes 2014.02.22 22 Feb 2014

notes

• Notes 2014.03.03 03 Mar 2014
• Notes 2014.02.27 27 Feb 2014
• Notes 2014.02.22 22 Feb 2014

wave-equation

• Dispersion relations for linear systems of PDEs 28 May 2014
• The Schrodinger equation is not a reaction-diffusion equation 22 Feb 2014

deferred-correction

• Notes 2014.03.03 03 Mar 2014

peanoclaw

• Notes 2014.03.03 03 Mar 2014

blog-post

• The PETSc DMDA is not lightweight 11 Mar 2014

petsc

• The PETSc DMDA is not lightweight 11 Mar 2014

pyclaw

• HyperPython 28 May 2014
• The PETSc DMDA is not lightweight 11 Mar 2014

memory

• The PETSc DMDA is not lightweight 11 Mar 2014

profiling

• The PETSc DMDA is not lightweight 11 Mar 2014

teaching

• Teaching in the open 18 Jul 2014
• Teaching with SageMathCloud 31 May 2014
• HyperPython 28 May 2014

sagemathcloud

• Teaching with SageMathCloud 31 May 2014

publishing

• KAUST goes open access 01 Jul 2014

collaboration

• Teaching in the open 18 Jul 2014

clawpack

• Clawpack turns 20 01 Dec 2014

education

• How and why I'm teaching my kids to code 09 Dec 2014

notebook

• Reviewing my marathon training using MapMyFitness and Pandas 31 Dec 2014

exercise

• Reviewing my marathon training using MapMyFitness and Pandas 31 Dec 2014

matplotlib

• Testing whether your code produces the correct plots -- in Python and on Travis 13 Jan 2015

reproducibility

• Step 6 - Keep track of issues 16 May 2015
• Step 2 - Code in the open 12 May 2015
• Step 1 - Use version control 11 May 2015
• 12 steps toward rock-solid scientific Python code 10 May 2015

version-control

• Step 2 - Code in the open 12 May 2015
• Step 1 - Use version control 11 May 2015
• 12 steps toward rock-solid scientific Python code 10 May 2015

git

• Step 2 - Code in the open 12 May 2015
• Step 1 - Use version control 11 May 2015

automation

• Step 7 - Automate the tests 29 May 2015

running

• The top 10 signs that you are running the Hejaz 50 Ultramarathon 28 Mar 2016

Saudi-Arabia

• The top 10 signs that you are running the Hejaz 50 Ultramarathon 28 Mar 2016

dynamical-systems

• Modeling Coronavirus part V -- try the model yourself 22 Mar 2020
• Modeling Coronavirus part IV -- understanding exponential growth 20 Mar 2020
• Modeling Coronavirus part III -- predictions 19 Mar 2020
• Modeling Coronavirus part II -- estimating parameters 19 Mar 2020
• Modeling Coronavirus part I -- the SIR model 17 Mar 2020

epidemiology

• Modeling Coronavirus part V -- try the model yourself 22 Mar 2020
• Modeling Coronavirus part IV -- understanding exponential growth 20 Mar 2020
• Modeling Coronavirus part III -- predictions 19 Mar 2020
• Modeling Coronavirus part II -- estimating parameters 19 Mar 2020
• Modeling Coronavirus part I -- the SIR model 17 Mar 2020

COVID-19

• Modeling Coronavirus part V -- try the model yourself 22 Mar 2020
• Modeling Coronavirus part IV -- understanding exponential growth 20 Mar 2020
• Modeling Coronavirus part III -- predictions 19 Mar 2020
• Modeling Coronavirus part II -- estimating parameters 19 Mar 2020
• Modeling Coronavirus part I -- the SIR model 17 Mar 2020

interactive

• Modeling Coronavirus part V -- try the model yourself 22 Mar 2020

widgets

• Modeling Coronavirus part V -- try the model yourself 22 Mar 2020

jupyter

• Modeling Coronavirus part V -- try the model yourself 22 Mar 2020